Apollon finished their Europa League campaign in style on Thursday night with a superb 3-1 win in Marseille.
The Limassol club finish the group stage in third place, behind Lazio and Eintracht Frankfurt, with two wins, one draw and three defeats.
AEK also wrapped up their campaign later on Thursday with a disappointing 5-1 home defeat to German side Bayer Leverkusen in Nicosia.
David Catala gave AEK a great start with an early goal, but Leverkusen hit back in style, scoring five times as they topped Group A ahead of Zurich.
AEK finished in third place, with one win, two draws and three defeats.