The Met service issued yet another thunderstorm warning, this time for Sunday afternoon.
The warning is valid between 1pm and 5pm, the service said.
Earlier Saturday, the service issued a warning for isolated heavy thunderstorms in mountainous and inland areas between 1pm and 5pm.
Shower rates will range between 35 and 50 millimetres per hour, the service said.
A short storm on Friday in Nicosia flooded some roads and basements with the fire service having to deploy crews to provide assistance.